• 06Sep

    Step by step guide to extracting your DNA from your spit


    Materials Required:

    • 1 Shot glass
    • Several Drops of Dish Soap – must contain sodium laurel sulfate
    • 1 pinch of salt
    • Contact lens solution OR meat tenderizer OR pineapple juice (optional)
    • Ice-cold 120+ proof liquor (that’s 60% plus – Bacardi 151 should be sufficient)

    Step 1: Spit into the shot glass

    -Rub the inside of your cheeks and rub your tongue around. Try and fill at least 1/4 of the glass with spit. This is harder than it sounds!  Think about bacon.


    Why are we doing this?

    Spit contains cells from your mouth and cells contain DNA.   This is the same DNA that is in every cell in your body (except for those pesky microbes that are all over the place).


    Step 2:  Add the dish soap

    - Mix it around gently


    Why are we doing this?

    Dish soap causes the cells in your spit to lyse (aka die, break open, explode).  Once they lyse, the DNA is released into the spit, just waiting for us to find it.


    Step 3: Add Contact Lens solution, Meat Tenderizer or Pineapple Juice
    -Give it a gentle stir


    Why are we doing this?

    All three of those ingredients contain protease – enzymes which break down proteins.  Since we just lysed the cells, everything in them is floating around, including proteins.  To help extract the DNA we will break down some of these proteins using protease.


    Step 4:  Add the pinch of salt

    - Give it a gentle stir


    Why are we doing this?

    DNA is a negatively charged molecule.  To help it precipitate we add salt (which forms Na+ and Cl- ions in water).  The Sodium (Na+ ions) will be attracted to the DNA.

    This is important because we are trying to gather a large amount of DNA in one place.  If they are negatively charged they will repel each other.  If the negative charge is matched by a positive charge (the Sodium ions) it will make it much easier for the DNA to gather together.


    Step 5: Fill the rest of the shot glass of alcohol

    -You must be VERY careful in this step to pour the alcohol on TOP of the spit and not let it mix.  You can do this by pouring it down the side of the glass very gently and slowly.  Note: you must have steady hands, so no drinking the alcohol beforehand.


    Why are we doing this?

    DNA is very insoluble in alcohol, so the DNA at the surface of the spit precipitates out.  As this happens, DNA deeper in the spit solution gets drawn up and also precipitates.


    Step 6: Look at it!

    - In the alcohol you should see a white cloudy mass, this is your DNA.  Apologies, you cannot actually see the helix.

    You’re done!

    Reference: http://www.instructables.com/id/5-minute-DNA-Extraction-in-a-Shot-Glass/

  • 20Aug

    The iGEM 2010 forum is up and running! Please join the discussion and share your thoughts.

  • 02Aug

    http://www.cyberplasm.net/

    A team of scientists from Northeastern University (Joseph Ayers and Yong-Bin Kim), UCSF (Chris Voigt), University of Alabama at Birmingham (Vladimir Parpura) and Newcastle University (Daniel Frankel) have teamed up at the NSF/EPSRC Synthetic Biology Sandpit to propose the construction of a biohybrid robot that moves like a lamprey eel.

  • 25Jun

    Objective: Create an engineered bacteriophage that eliminates Staphylococcus aureus

    To achieve  our objective we have divided the project into 6 tracks that will be pursued in parallel:

    1. Biofilm- observe Staphylococcus aureus biofilm growth under lab conditions so we can characterize effectiveness of our engineered phage

    2. DspB- extract the Dispersin B gene from A. pleuropneumoniae  so we can integrate into the phage genome

    3. Phage- develop standard protocol to manipulate the phage genome in a simple and well-defined manner

    4. Quorum- characterize the existing P2 biobrick part

    5. Modelling- model the interaction between s. aureus biofilm, phage, and relevant molecules in the system, to supplement our wet lab experiment

    6. Human Practices- gather feedback from public opinion of synthetic biology



  • 15May

    Thanks to everybody who came out to the AMBL Science Field Trip! We hope you enjoyed the lessons on genetics, the AMBL Jeopardy (and it’s live music), and hope that you will continue to support the club in the future!

    Here are some photos from the field trip – please enjoy them!

    Filed under: club matters
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  • 12Apr

    The Advanced Molecular Biology Laboratory (AMBL) will be holding a special one-day Science Field Trip FREE for UBC iGEM members! You will be performing DNA fingerprinting analysis – commonly used by forensic scientists and CSI – to check for genetic elements in your own DNA. Using the powerful PCR technique, you will be isolating and amplifying your DNA then analyzing it for the Alu genetic element. This field trip promises to a fun and entertaining way to get into contemporary molecular biology!

    Where: Advanced Molecular Biology Lab, Michael Smith Laboratories, UBC (Map)
    When: Friday May 14th, 2010
    How to Sign Up: RSVP Here. Spaces are limited and FREE Admission for iGEM Club Members and only $5 for non-members. Password: check in by e-mailing the execs.

  • 12Apr

    There will be no Journal Club this term. Special thanks to those who presented and participated this year!

    Filed under: club matters
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  • 08Apr

    http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0050058

    More on the issue of patenting, law, and intellectual property.

  • 08Apr

    http://www.nature.com/nbt/journal/v28/n4/full/nbt0410-293.html

    This is a very insightful article on the impact of President Obama’s recent healthcare legislation on the biotechnology industry. Not just about economics, this article also discusses how economics itself will drive innovation in the biotechnology industry w.r.t. healthcare products in diagnosis and treatment.

  • 06Apr

    We have decided our project this year: biofilm degradation! Thanks to those who participated in the discussion last week and it was a close race. With an awesome team we have this year, we will use this week’s JC time for them to further discuss and develop the biofilm idea, but all are welcome to participate!

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